For games with a shitton of content, I’m not sure it’s entirely possible. You just can’t have every single combination of stuff checked out after every change
What’s vague? You can divide the ship into 3 and replace the missing pieces for each third. You now have 3 ships with 33% of the original, all of which fit your criteria
The article lists like 3 offending things in a bunch of games totalling dozens, if not hundreds of hours of gameplay. As somebody who hasn’t actually played the games, sheesh. Give us a bit more content would ya?