Poppy Playtime (2021) : controls the extendable arms separately and solve puzzles that way
Older games:
Psychonauts (2005) : some of the scenes toy around with gravity
Half-life 2 (2004): the gravity-gun was groundbreaking.
Serious Sam (2001) : just a shooter, but the quantity of enemies is so huge that you need to figure out different strategies. It’s sort of like geometry wars only in first person view and with gory graphics.
Glover (1998) : it’s a 3d platformer, where you control a glove, which needs to get ball through the level.
Head over heels (1987) : control the 2 characters Head or Heels separately or together to solve puzzles.( It was recently released on steam. I haven’t tried the remake, but the original can also be found on emulators or online)